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Welcome to hpNAFF Analysis(version 0.0.3, build 201208). ©2018 Heiko Pälike Usage: hpnaff [options] file file format: tab separated columns, data must be equidistantly spaced. Instead of file can specify '-' for stdin. -h, --help: Displays help message. -r, --fracRMSChangeLimit: fracRMSChangeLimit. Default: 0.000002 -f, --fracFreqAccuracyLimit: fracFreqAccuracyLimit. Default: 0.00000001 -m, --maxFrequencies: maxFrequencies. Default: 30 -c, --freqCycleLimit: freqCycleLimit. Default: 100 -l, --lowerFreqLimit: lowerFreqLimit. Default: 0.0 -u, --upperFreqLimit: upperFreqLimit. Default: 0.5 (NYQUIST) -d, --detrendingOrder: Order for polynomial detrending. 0 removes DC only. >0 removes a polynomial fit. Default: not set -dC, --detrendChunks: Option to apply detrending (-d) to individual chunks. Default: false -fAL, --filterAbscissaLower: filter on Abscissa (x-axis) data greater or equal than value specified. -fAU, --filterAbscissaUpper: filter on Abscissa (x-axis) data lesser or equal than value specified. -s, --chunkSize: Split the input file into chunks of this size. Default: not set, no chunking -w, --window_offsets: Specify windowing offset for evolutive analysis. Default: chunkSize if set, or None. -z, --columnSeparator: Use this as columns separtor for input file instead of default tab \t. Default: \t -k, --skipHeaderLines: Specify number of (header)lines to be skipped. Default: 0 -n, --decimate: Specify decimation of input data. Default: 1 (take every value) -a, --abscissaColumn: Specify column number for abscissa (time or depth). Default: 1 -o, --ordinateColumn: Specify column number for ordinate (data). Default: 2 -C, --complex: Compute spectra for complex input. Default: false. If true, by default takes values from abscissa column + 1. -Co, --ComplexOrdinateColumn: Specify column number for ordinate (data), complex part. Default: 3 (if C option used) -t, --deltaT: Specify time/depth offset between data. Default: 1.0 -x, --ratios: Compute and output frequency ratio matrix. Default: false. --ratio_list: If ratio_option is set, provides comma separated list of frequency ratios to highlight in output. --output_detrended_data: Output detrended data to this filename. Not implemented yet. --version: Shows current version and build of this software -v, --verbose: Print verbose messages. Specify multiple times to increase verbosity. --references: Shows references to papers and sources. --licenses: Shows licenses of code components used in this software. |
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after download, add execute permissions by 'chmod a+x ./hpnaff'
Then try it on a sample file file: etp_1kyr_36Ma.txt:
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20182019-1103-04 1012:5047:4137.463127 hpnaff[202167068:27304911324288] Welcome to hpNAFF Analysis(version 0.0.3, build 178208). ©2018 Heiko Pälike ================================================================================================================================================== # | chunk | t0 | points | frequency | amplitude | phase | significance | period | arcsec/yr | phase (deg) 0 | 0 | 0.0000 | 14001 | 0.000000000 | 0.00000000 | 0.000000000 | 0.000000000 | inf | 0.0000000 | 0.0000000 1 | 0 | 0.0000 | 14001 | 0.002472456 | 0.75721258 | 3.740563127 | 0.795224850 | 404.4561076 | 3.2043032 | 214.3184802 2 | 0 | 0.0000 | 14001 | 0.010522542 | 0.59639514 | -0.083030428 | 0.840326030 | 95.0340671 | 13.6372149 | -4.7572931 3 | 0 | 0.0000 | 14001 | 0.024999241 | 0.53877772 | 5.657761056 | 0.827374132 | 40.0012145 | 32.3990163 | 324.1658300 4 | 0 | 0.0000 | 14001 | 0.008040668 | 0.50803290 | 2.884638325 | 0.832167805 | 124.3677841 | 10.4207051 | 165.2776014 5 | 0 | 0.0000 | 14001 | 0.010102115 | 0.39766702 | 4.191460452 | 0.868275178 | 98.9891739 | 13.0923408 | 240.1529939 6 | 0 | 0.0000 | 14001 | 0.042828239 | 0.31115152 | 1.466354179 | 0.901608023 | 23.3490806 | 55.5053976 | 84.0159058 7 | 0 | 0.0000 | 14001 | 0.007627856 | 0.30706911 | 0.558756637 | 0.900168885 | 131.0984453 | 9.8857008 | 32.0143971 8 | 0 | 0.0000 | 14001 | 0.000407279 | 0.27097231 | 2.625060814 | 0.917986627 | 2455.3193080 | 0.5278336 | 150.4049056 9 | 0 | 0.0000 | 14001 | 0.045302069 | 0.26148887 | 5.142663908 | 0.908826102 | 22.0740470 | 58.7114814 | 294.6529374 10 | 0 | 0.0000 | 14001 | 0.025832617 | 0.23907704 | 3.749692167 | 0.917331367 | 38.7107506 | 33.4790719 | 214.8415356 11 | 0 | 0.0000 | 14001 | 0.001034652 | 0.22887920 | 0.316263467 | 0.926607014 | 966.5081496 | 1.3409095 | 18.1205619 12 | 0 | 0.0000 | 14001 | 0.053350844 | 0.23311864 | 1.355155013 | 0.912974997 | 18.7438458 | 69.1426943 | 77.6446628 13 | 0 | 0.0000 | 14001 | 0.009911387 | 0.18079486 | 5.692180061 | 0.941223401 | 100.8940493 | 12.8451580 | 326.1378937 14 | 0 | 0.0000 | 14001 | 0.019210470 | 0.15673509 | -0.475811101 | 0.949106113 | 52.0549476 | 24.8967689 | -27.2619679 15 | 0 | 0.0000 | 14001 | 0.052929481 | 0.14841497 | 5.755576341 | 0.947991688 | 18.8930626 | 68.5966076 | 329.7702330 16 | 0 | 0.0000 | 14001 | 0.009488271 | 0.15112041 | -0.166596638 | 0.960411285 | 105.3932755 | 12.2967997 | -9.5452843 17 | 0 | 0.0000 | 14001 | 0.025098798 | 0.17311913 | 2.629896210 | 0.958954086 | 39.8425454 | 32.5280423 | 150.6819534 18 | 0 | 0.0000 | 14001 | 0.025414340 | 0.14355863 | 4.818018102 | 0.948646429 | 39.3478637 | 32.9369851 | 276.0521028 19 | 0 | 0.0000 | 14001 | 0.024888808 | 0.14098312 | 5.710170221 | 0.964800624 | 40.1787023 | 32.2558949 | 327.1686540 20 | 0 | 0.0000 | 14001 | 0.010323185 | 0.13699990 | -1.010239671 | 0.950068678 | 96.8693283 | 13.3788478 | -57.8824695 21 | 0 | 0.0000 | 14001 | 0.007440236 | 0.12986997 | 2.040413384 | 0.952028441 | 134.4043325 | 9.6425463 | 116.9070753 22 | 0 | 0.0000 | 14001 | 0.001455303 | 0.12708837 | 2.315320953 | 0.947284449 | 687.1422369 | 1.8860724 | 132.6581188 23 | 0 | 0.0000 | 14001 | 0.010925100 | 0.11817448 | -0.359553603 | 0.955088751 | 91.5323402 | 14.1589300 | -20.6009040 24 | 0 | 0.0000 | 14001 | 0.009667251 | 0.11874251 | 2.622499884 | 0.954076811 | 103.4420280 | 12.5287567 | 150.2581751 25 | 0 | 0.0000 | 14001 | 0.010413463 | 0.09715314 | 2.916722835 | 0.980490600 | 96.0295312 | 13.4958485 | 167.1159085 26 | 0 | 0.0000 | 14001 | 0.000901134 | 0.09569726 | 1.601650029 | 0.968540900 | 1109.7124523 | 1.1678701 | 91.7677869 27 | 0 | 0.0000 | 14001 | 0.012994167 | 0.10086003 | 0.611296677 | 0.967944111 | 76.9576057 | 16.8404408 | 35.0247196 28 | 0 | 0.0000 | 14001 | 0.042724400 | 0.09486677 | 1.049712502 | 0.980633320 | 23.4058291 | 55.3708222 | 60.1440960 29 | 0 | 0.0000 | 14001 | 0.000231340 | 0.09813349 | 0.120421080 | 0.967044518 | 4322.6469465 | 0.2998163 | 6.8996196 30 | 0 | 0.0000 | 14001 | 0.005563540 | 0.10009924 | 2.397732816 | 0.967425007 | 179.7416848 | 7.2103475 | 137.3799708 31 | 0 | 0.0000 | 14001 | 0.010638958 | 0.09688648 | -0.508418993 | 0.964555307 | 93.9941712 | 13.7880890 | -29.1302625 32 | 0 | 0.0000 | 14001 | 0.008918727 | 0.08741944 | 2.593049225 | 0.963917464 | 112.1236215 | 11.5586705 | 148.5707767 33 | 0 | 0.0000 | 14001 | 0.007853668 | 0.09431921 | 1.158982011 | 0.966015092 | 127.3290367 | 10.1783539 | 66.4047777 34 | 0 | 0.0000 | 14001 | 0.024592220 | 0.08828171 | 3.104290426 | 0.962948353 | 40.6632660 | 31.8715177 | 177.8627398 35 | 0 | 0.0000 | 14001 | 0.008385587 | 0.08641115 | 2.992612010 | 0.964466604 | 119.2522373 | 10.8677206 | 171.4640379 36 | 0 | 0.0000 | 14001 | 0.018145511 | 0.08763660 | 3.810401953 | 0.965100178 | 55.1100477 | 23.5165828 | 218.3199502 37 | 0 | 0.0000 | 14001 | 0.024810831 | 0.08240291 | 4.521072849 | 0.982190253 | 40.3049788 | 32.1548364 | 259.0383931 38 | 0 | 0.0000 | 14001 | 0.042929640 | 0.09470459 | -1.714770813 | 0.974168394 | 23.2939296 | 55.6368128 | -98.2491304 39 | 0 | 0.0000 | 14001 | 0.001312871 | 0.08074684 | 0.777678604 | 0.975863805 | 761.6892389 | 1.7014813 | 44.5577018 40 | 0 | 0.0000 | 14001 | 0.002884917 | 0.08065197 | 2.947032143 | 0.969528197 | 346.6303915 | 3.7388528 | 168.8525039 41 | 0 | 0.0000 | 14001 | 0.009282092 | 0.07995912 | -0.902914815 | 0.959472392 | 107.7343296 | 12.0295917 | -51.7332082 42 | 0 | 0.0000 | 14001 | 0.002172887 | 0.07898195 | 1.985388426 | 0.966843584 | 460.2171462 | 2.8160620 | 113.7543775 43 | 0 | 0.0000 | 14001 | 0.025182288 | 0.07351399 | 1.270869503 | 0.989395181 | 39.7104512 | 32.6362447 | 72.8154589 44 | 0 | 0.0000 | 14001 | 0.002006049 | 0.07122474 | 1.007509626 | 0.970121706 | 498.4923050 | 2.5998395 | 57.7260494 45 | 0 | 0.0000 | 14001 | 0.008233354 | 0.07018462 | 4.902074997 | 0.962605563 | 121.4571854 | 10.6704268 | 280.8682082 46 | 0 | 0.0000 | 14001 | 0.043838032 | 0.06715352 | 3.232504869 | 0.965810782 | 22.8112428 | 56.8140900 | 185.2088863 47 | 0 | 0.0000 | 14001 | 0.007224019 | 0.06531452 | 4.276908721 | 0.978785703 | 138.4271092 | 9.3623280 | 245.0488191 48 | 0 | 0.0000 | 14001 | 0.045402169 | 0.07436495 | 2.063109297 | 0.977076727 | 22.0253794 | 58.8412112 | 118.2074554 49 | 0 | 0.0000 | 14001 | 0.002344771 | 0.06402237 | 1.101841661 | 0.974716536 | 426.4809539 | 3.0388227 | 63.1308769 50 | 0 | 0.0000 | 14001 | 0.034012471 | 0.06632261 | 0.311286985 | 0.964879805 | 29.4009808 | 44.0801621 | 17.8354305 51 | 0 | 0.0000 | 14001 | 0.000615717 | 0.06955959 | 0.324652520 | 0.966238479 | 1624.1226060 | 0.7979693 | 18.6012192 52 | 0 | 0.0000 | 14001 | 0.024999132 | 0.06125458 | 3.871230210 | 0.987944595 | 40.0013889 | 32.3988750 | 221.8051526 53 | 0 | 0.0000 | 14001 | 0.012584554 | 0.06352103 | 4.354135730 | 0.970616108 | 79.4624885 | 16.3095824 | 249.4736007 54 | 0 | 0.0000 | 14001 | 0.007042302 | 0.05954369 | 3.178070921 | 0.967975778 | 141.9990167 | 9.1268238 | 182.0900508 55 | 0 | 0.0000 | 14001 | 0.053168977 | 0.06126972 | -0.361830892 | 0.974607875 | 18.8079603 | 68.9069938 | -20.7313830 56 | 0 | 0.0000 | 14001 | 0.018476857 | 0.05675901 | 1.358226644 | 0.977498039 | 54.1217594 | 23.9460065 | 77.8206543 57 | 0 | 0.0000 | 14001 | 0.025289765 | 0.06621217 | -0.908124267 | 0.973848255 | 39.5416874 | 32.7755361 | -52.0316877 58 | 0 | 0.0000 | 14001 | 0.045202487 | 0.05979910 | 4.539755824 | 0.986931115 | 22.1226766 | 58.5824230 | 260.1088487 59 | 0 | 0.0000 | 14001 | 0.001552070 | 0.05459046 | 3.384103199 | 0.981459102 | 644.3008068 | 2.0114828 | 193.8948307 60 | 0 | 0.0000 | 14001 | 0.010774958 | 0.06013873 | -0.920994477 | 0.970525658 | 92.8077872 | 13.9643454 | -52.7690965 61 | 0 | 0.0000 | 14001 | 0.035180014 | 0.05381168 | 6.108664389 | 0.971837151 | 28.4252302 | 45.5932984 | 350.0006880 62 | 0 | 0.0000 | 14001 | 0.025932854 | 0.05497185 | 0.528441663 | 0.981080765 | 38.5611237 | 33.6089791 | 30.2774770 63 | 0 | 0.0000 | 14001 | 0.019098347 | 0.05289607 | 5.666427467 | 0.977106361 | 52.3605527 | 24.7514576 | 324.6623788 64 | 0 | 0.0000 | 14001 | 0.052829237 | 0.05592636 | 4.622260527 | 0.978276073 | 18.9289123 | 68.4666917 | 264.8360200 65 | 0 | 0.0000 | 14001 | 0.011547573 | 0.05030718 | 3.661455369 | 0.969207740 | 86.5982825 | 14.9656548 | 209.7859395 66 | 0 | 0.0000 | 14001 | 0.052667555 | 0.04771644 | 4.565272390 | 0.975236135 | 18.9870216 | 68.2571512 | 261.5708403 67 | 0 | 0.0000 | 14001 | 0.008514638 | 0.04804064 | 4.938804767 | 0.978348984 | 117.4448071 | 11.0349707 | 282.9726690 68 | 0 | 0.0000 | 14001 | 0.017723966 | 0.04660213 | 1.785804269 | 0.976900743 | 56.4207807 | 22.9702600 | 102.3190477 69 | 0 | 0.0000 | 14001 | 0.013408861 | 0.04526629 | -0.218064193 | 0.976731995 | 74.5775492 | 17.3778840 | -12.4941579 70 | 0 | 0.0000 | 14001 | 0.004944881 | 0.04401069 | 3.792380701 | 0.977679719 | 202.2293298 | 6.4085660 | 217.2874084 71 | 0 | 0.0000 | 14001 | 0.024477668 | 0.04221973 | 2.795576240 | 0.982047887 | 40.8535657 | 31.7230572 | 160.1747198 72 | 0 | 0.0000 | 14001 | 0.025733760 | 0.04584983 | 3.159867016 | 0.992264397 | 38.8594588 | 33.3509534 | 181.0470438 73 | 0 | 0.0000 | 14001 | 0.044937430 | 0.04272239 | 0.214967037 | 0.979100869 | 22.2531639 | 58.2389096 | 12.3167040 74 | 0 | 0.0000 | 14001 | 0.018373301 | 0.04170326 | 4.267372615 | 0.976418419 | 54.4268023 | 23.8117976 | 244.5024405 75 | 0 | 0.0000 | 14001 | 0.016041231 | 0.04508949 | 2.028721000 | 0.980103194 | 62.3393556 | 20.7894353 | 116.2371511 |
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"Evolutive" outputs can be obtained with the -s option, e.g. -s 1000 computes an analysis for every 1000 points.
Source code available at:
https://paloz.marum.de/bitbucket/scm/essp/hpnaff.git
Notes:
This is a Swift implementation of https://ops.aps.anl.gov/manuals/SDDStoolkit/SDDStoolkitsu61.html
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