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Code Block
languagebash
Welcome to hpNAFF Analysis(version 0.0.3, build 208213). ©2018 Heiko Pälike
Usage: hpnaff [options] file
file format: tab separated columns, data must be equidistantly spaced. Instead of file can specify '-' for stdin.
  -h, --help:
      Displays help message.
  -r, --fracRMSChangeLimit:
      fracRMSChangeLimit. Default: 0.000002
  -f, --fracFreqAccuracyLimit:
      fracFreqAccuracyLimit. Default: 0.00000001
  -m, --maxFrequencies:
      maxFrequencies. Default: 30
  -c, --freqCycleLimit:
      freqCycleLimit. Default: 100
  -l, --lowerFreqLimit:
      lowerFreqLimit. Default: 0.0
  -u, --upperFreqLimit:
      upperFreqLimit. Default: 0.5 (NYQUIST)
  -d, --detrendingOrder:
      Order for polynomial detrending. 0 removes DC only. >0 removes a polynomial fit. Default: not set
  -dC, --detrendChunks:
      Option to apply detrending (-d) to individual chunks. Default: false
  -fAL, --filterAbscissaLower:
      filter on Abscissa (x-axis) data greater or equal than value specified.
  -fAU, --filterAbscissaUpper:
      filter on Abscissa (x-axis) data lesser or equal than value specified.
  -s, --chunkSize:
      Split the input file into chunks of this size. Default: not set, no chunking
  -w, --window_offsets:
      Specify windowing offset for evolutive analysis. Default: chunkSize if set, or None.
  -z, --columnSeparator:
      Use this as columns separtor for input file instead of default tab \t. Default: \t
  -k, --skipHeaderLines:
      Specify number of (header)lines to be skipped. Default: 0
  -n, --decimate:
      Specify decimation of input data. Default: 1 (take every value)
  -a, --abscissaColumn:
      Specify column number for abscissa (time or depth). Default: 1
  -o, --ordinateColumn:
      Specify column number for ordinate (data). Default: 2
  -C, --complex:
      Compute spectra for complex input. Default: false. If true, by default takes values from abscissa column + 1.
  -Co, --ComplexOrdinateColumn:
      Specify column number for ordinate (data), complex part. Default: 3 (if C option used)
  -t, --deltaT:
      Specify time/depth offset between data. Default: 1.0
  -x, --ratios:
      Compute and output frequency ratio matrix. Default: false.
  --ratio_list:
      If ratio_option is set, provides comma separated list of frequency ratios to highlight in output.
  --output_detrended_data:
      Output detrended data to this filename. Not implemented yet.
  --version:
      Shows current version and build of this software
  -v, --verbose:
      Print verbose messages. Specify multiple times to increase verbosity.
  --references:
      Shows references to papers and sources.
  --licenses:
      Shows licenses of code components used in this software.

...

Binary download: 

View file
namehpnaff.dmg
height150


after download, add , open the disk image (double click) and copy 'hpnaff' to a location in your search path, and  add execute permissions by 'chmod a+x ./hpnaff'
Then try it on a sample file: etp_1kyr_36Ma.txt


user$ ./hpnaff etp_1kyr_36Ma.txt -d 1 -m 75



Code Block
languagetext
2019-03-04 12:47:37.127 hpnaff[67068:11324288] Welcome to hpNAFF Analysis(version 0.0.3, build 208213). ©2018 Heiko Pälike
=================================================================================================================================================
    # | chunk |       t0       | points |    frequency |     amplitude |        phase | significance |       period |    arcsec/yr |  phase (deg)
    0 |     0 |         0.0000 |  14001 |  0.000000000 |    0.00000000 |  0.000000000 |  0.000000000 |          inf |    0.0000000 |    0.0000000
    1 |     0 |         0.0000 |  14001 |  0.002472456 |    0.75721258 |  3.740563127 |  0.795224850 |  404.4561076 |    3.2043032 |  214.3184802
    2 |     0 |         0.0000 |  14001 |  0.010522542008040667 |    0.5963951450803028 |  -02.083030428884682305 |  0.840326030883312411 |   95124.03406713677983 |   1310.63721494207039 |   -4165.75729312801213
    3 |     0 |         0.0000 |  14001 |  0.024999241010522542 |    0.5387777259639738 |  5-0.657761056082998181 |  0.827374132819232944 |   4095.00121450340732 |   3213.39901636372141 |   324-4.16583007554455
    4 |     0 |         0.0000 |  14001 |  0.008040668024999241 |    0.5080329053877771 |  25.884638325657761090 |  0.832167805799538049 |   12440.36778410012145 |   1032.42070513990163 |  165324.27760141658319
    5 |     0 |         0.0000 |  14001 |  0.010102115 |    0.39766702 |  4.191460452191460152 |  0.868275178868275243 |   98.98917399891738 |   13.0923408 |  240.15299391529767
    6 |     0 |         0.0000 |  14001 |  0.042828239 |    0.31115152 |  1.466354179466354076 |  0.901608023901608079 |   23.3490806 |   55.5053976 |   84.01590580158998
    7 |     0 |         0.0000 |  14001 |  0.007627856 |    0.30706911 |  0.558756637558756432 |  0.900168885900168948 |  131.0984453 |    9.8857008 |   32.01439710143854
    8 |     0 |         0.0000 |  14001 |  0.000407279 |    0.27097231 |  2.625060814625060813 |  0.917986627917986685 |  2455.31930803193079 |    0.5278336 |  150.4049056
    9 |     0 |         0.0000 |  14001 |  0.045302069 |    0.26148887 |  5.142663908142663739 |  0.908826102908826171 |   22.0740470 |   58.71148147114815 |  294.65293746529277
   10 |     0 |         0.0000 |  14001 |  0.025832617 |    0.23907704 |  3.749692167749692846 |  0.917331367917331436 |   38.7107506 |   33.47907194790718 |  214.84153568415746
   11 |     0 |         0.0000 |  14001 |  0.001034652 |    0.22887920 |  0.316263467 |  0.926607014926607081 |  966.5081496 |    1.3409095 |   18.1205619
   12 |     0 |         0.0000 |  14001 |  0.053350844 |    0.23311864 |  1.355155013355156356 |  0.912974997912975085 |   18.7438458 |   69.1426943 |   77.64466286447398
   13 |     0 |         0.0000 |  14001 |  0.009911387 |    0.1807948618079485 |  5.692180061692179627 |  0.941223401941223463 |  100.89404938940492 |   12.8451580 |  326.13789371378689
   14 |     0 |         0.0000 |  14001 |  0.019210470 |    0.15673509 | -0.475811101 |  0.949106113949106171 |   52.0549476 |   24.8967689 |  -27.2619679
   15 |     0 |         0.0000 |  14001 |  0.052929481 |    0.14841497 |  5.755576341755575959 |  0.947991688947991751 |   18.8930626 |   68.5966076 |  329.77023307702111
   16 |     0 |         0.0000 |  14001 |  0.009488271 |    0.15112041 | -0.166596638166596806 |  0.960411285960411335 |  105.3932755 |   12.2967997 |   -9.54528435452938
   17 |     0 |         0.0000 |  14001 |  0.025098798 |    0.17311913 |  2.629896210629896156 |  0.958954086958954143 |   39.8425454 |   32.5280423 |  150.68195346819503
   18 |     0 |         0.0000 |  14001 |  0.025414340 |    0.14355863 |  4.818018102818017768 |  0.948646429948646500 |   39.34786373478636 |   32.9369851 |  276.05210280520837
   19 |     0 |         0.0000 |  14001 |  0.024888808 |    0.14098312 |  5.710170221710170315 |  0.964800624964800678 |   40.1787023 |   32.2558949 |  327.16865401686593
   20 |     0 |         0.0000 |  14001 |  0.010323185 |    0.1369999013699959 | -1.010239671010235037 |  0.950068678950068499 |   96.86932838693296 |   13.37884783788476 |  -57.88246958822039
   21 |     0 |         0.0000 |  14001 |  0.007440236 |    0.12986997 |  2.040413384040412911 |  0.952028441952028505 |  134.40433254043323 |    9.6425463 |  116.90707539070483
   22 |     0 |         0.0000 |  14001 |  0.001455303 |    0.12708837 |  2.315320953 |  0.947284449947284522 |  687.1422369 |    1.8860724 |  132.6581188
   23 |     0 |         0.0000 |  14001 |  0.010925100 |    0.1181744811817449 | -0.359553603359553678 |  0.955088751955088819 |   91.53234025323401 |   14.1589300 |  -20.60090406009083
   24 |     0 |         0.0000 |  14001 |  0.009667251 |    0.11874251 |  2.622499884622499866 |  0.954076811954076881 |  103.4420280 |   12.5287567 |  150.25817512581741
   25 |     0 |         0.0000 |  14001 |  0.010413463010413464 |    0.0971531409715416 |  2.916722835916666621 |  0.980490600980489783 |   96.02953120295264 |   13.49584854958491 |  167.11590851126876
   26 |     0 |         0.0000 |  14001 |  0.000901134 |    0.09569726 |  1.601650029 |  0.968540900968540925 |  1109.7124523 |    1.1678701 |   91.7677869
   27 |     0 |         0.0000 |  14001 |  0.012994167 |    0.10086003 |  0.611296677611296753 |  0.967944111967944137 |   76.9576057 |   16.8404408 |   35.02471960247240
   28 |     0 |         0.0000 |  14001 |  0.042724400 |    0.09486677 |  1.049712502049712386 |  0.980633320980633336 |   23.4058291 |   55.3708222 |   60.14409601440894
   29 |     0 |         0.0000 |  14001 |  0.000231340042929640 |    0.0981334909470459 |  0-1.120421080714770601 |  0.967044518980891619 |   432223.64694652939296 |    055.29981636368128 |    6.8996196-98.2491183
   30 |     0 |         0.0000 |  14001 |  0.005563540000231340 |    0.1000992409813349 |  20.397732816120421069 |  0.967425007966402553 |  1794322.74168486469415 |    70.21034752998163 |  137  6.37997088996190
   31 |     0 |         0.0000 |  14001 |  0.010638958005563540 |    0.0968864810009924 |  -02.508418993397732793 |  0.964555307966768393 |   93179.99417127416848 |   13 7.78808902103475 |  -29137.13026253799694
   32 |     0 |         0.0000 |  14001 |  0.008918727010638957 |    0.0874194409688662 |  2-0.593049225508364457 |  0.963917464963816275 |  112 93.12362159941773 |   1113.55867057880881 |  148-29.57077671271378
   33 |     0 |         0.0000 |  14001 |  0.007853668008918727 |    0.0943192108741944 |  12.158982011593049727 |  0.966015092963136904 |  127112.32903671236216 |   1011.17835395586705 |   66148.40477775708054
   34 |     0 |         0.0000 |  14001 |  0.024592220007853669 |    0.0882817109431900 |  31.104290426158965447 |  0.962948353965251357 |   40127.66326603290309 |   3110.87151771783544 |  177 66.86273984038287
   35 |     0 |         0.0000 |  14001 |  0.008385587 |    0.0864111508641121 |  2.992612010992612459 |  0.964466604964986966 |  119.25223732522374 |   10.8677206 |  171.46403794640636
   36 |     0 |         0.0000 |  14001 |  0.018145511024592220 |    0.0876366008828171 |  3.810401953104291362 |  0.965100178960710531 |   5540.11004776632660 |   2331.51658288715177 |  218177.31995028627934
   37 |     0 |         0.0000 |  14001 |  0.024810831018145511 |    0.0824029108763660 |  43.521072849810402005 |  0.982190253964224191 |   4055.30497881100477 |   3223.15483645165828 |  259218.03839313199532
   38 |     0 |         0.0000 |  14001 |  0.042929640024810831 |    0.0947045908240291 | -1 4.714770813521072848 |  0.974168394981726642 |   2340.29392963049788 |   5532.63681281548364 |  -98259.24913040383931
   39 |     0 |         0.0000 |  14001 |  0.001312871 |    0.08074684 |  0.777678604777678564 |  0.975863805975863821 |  761.68923896892383 |    1.7014813 |   44.55770185576995
   40 |     0 |         0.0000 |  14001 |  0.002884917 |    0.08065197 |  2.947032143947031918 |  0.969528197969528217 |  346.63039156303909 |    3.7388528 |  168.85250398524910
   41 |     0 |         0.0000 |  14001 |  0.009282092 |    0.07995912 | -0.902914815902914817 |  0.959472392959472422 |  107.7343296 |   12.0295917 |  -51.73320827332083
   42 |     0 |         0.0000 |  14001 |  0.002172887 |    0.07898195 |  1.985388426 |  0.966843584966843609 |  460.2171462 |    2.8160620 |  113.7543775
   43 |     0 |         0.0000 |  14001 |  0.025182288002006049 |    0.0735139907122474 |  1.270869503007509615 |  0.989395181970438583 |   39.7104512 |498.4923050 |    322.63624475998395 |   7257.81545897260487
   44 |     0 |         0.0000 |  14001 |  0.002006049007224026 |    0.0712247406531289 |  14.007509626276575966 |  0.970121706980491529 |  498138.49230504269586 |    29.59983953623382 |   57245.72604940297536
   45 |     0 |         0.0000 |  14001 |  0.008233354025182288 |    0.0701846207351399 |  41.902074997270869463 |  0.962605563988854719 |   12139.45718547104512 |   1032.67042686362447 |  280 72.86820828154565
   46 |     0 |         0.0000 |  14001 |  0.043838032012584554 |    0.0671535206352105 |  34.232504869354145054 |  0.965810782976073138 |   2279.81124284624898 |   5616.81409003095821 |  185249.20888634741350
   47 |     0 |         0.0000 |  14001 |  0.007224019008233397 |    0.0653145207018628 |  4.276908721899907055 |  0.978785703960922960 |  138121.42710924565512 |    910.36232806704825 |  245280.04881917439942
   48 |     0 |         0.0000 |  14001 |  0.045402169043838032 |    0.0743649506715352 |  23.063109297232504870 |  0.977076727964205369 |   22.02537948112428 |   5856.84121128140900 |  118185.20745542088863
   49 |     0 |         0.0000 |  14001 |  0.002344771045402169 |    0.0640223707436495 |  12.101841661063108412 |  0.974716536976470351 |   42622.48095390253794 |    358.03882278412112 |   63118.13087692074047
   50 |     0 |         0.0000 |  14001 |  0.034012471 |    0.06632261 |  0.311286985311287406 |  0.964879805964840418 |   29.4009808 |   44.0801621 |   17.83543058354546
   51 |     0 |         0.0000 |  14001 |  0.000615717007042301 |    0.0695595905954400 |  03.324652520178131531 |  0.966238479970294538 |  1624141.12260609990445 |    09.79796931268220 |   18182.60121920935235
   52 |     0 |         0.0000 |  14001 |  0.024999132002344771 |    0.0612545806402237 |  31.871230210101841745 |  0.987944595972261310 |   40426.00138894809570 |   32 3.39887500388227 |  221 63.80515261308817
   53 |     0 |         0.0000 |  14001 |  0.012584554000615717 |    0.0635210306955959 |  40.354135730324650477 |  0.970616108964170562 |   791624.46248851224848 |   16 0.30958247979694 |  249 18.47360076011022
   54 |     0 |         0.0000 |  14001 |  0.007042302024999132 |    0.0595436906125458 |  3.178070921871230045 |  0.967975778987178751 |   14140.99901670013889 |    932.12682383988750 |  182221.09005088051431
   55 |     0 |         0.0000 |  14001 |  0.053168977 |    0.0612697206126971 | -0.361830892361831494 |  0.974607875974608027 |   18.80796038079602 |   68.9069938 |  -20.73138307314175
   56 |     0 |         0.0000 |  14001 |  0.018476857 |    0.05675901 |  1.358226644358226770 |  0.977498039977498190 |   54.1217594 |   23.9460065 |   77.82065438206616
   57 |     0 |         0.0000 |  14001 |  0.025289765 |    0.0662121706621218 | -0.908124267908124366 |  0.973848255973848432 |   39.5416874 |   32.7755361 |  -52.03168770316934
   58 |     0 |         0.0000 |  14001 |  0.045202487 |    0.05979910 |  4.539755824539755588 |  0.986931115986931204 |   22.1226766 |   58.5824230 |  260.10884871088352
   59 |     0 |         0.0000 |  14001 |  0.001552070 |    0.05459046 |  3.384103199384103213 |  0.981459102981459234 |  644.30080683008070 |    2.0114828 |  193.89483078948316
   60 |     0 |         0.0000 |  14001 |  0.010774958010774957 |    0.0601387306013891 | -0.920994477920953234 |  0.970525658970525278 |   92.80778728077955 |   13.96434549643442 |  -52.76909657667334
   61 |     0 |         0.0000 |  14001 |  0.035180014 |    0.05381168 |  6.108664389108664130 |  0.971837151971837344 |   28.4252302 |   45.5932984 |  350.00068800006731
   62 |     0 |         0.0000 |  14001 |  0.025932854 |    0.0549718505497186 |  0.528441663528441357 |  0.981080765981080889 |   38.5611237 |   33.6089791 |   30.27747702774595
   63 |     0 |         0.0000 |  14001 |  0.019098347 |    0.05289607 |  5.666427467666427468 |  0.977106361977106525 |   52.3605527 |   24.7514576 |  324.6623788
   64 |     0 |         0.0000 |  14001 |  0.052829237 |    0.0559263605592637 |  4.622260527622260246 |  0.978276073978276226 |   18.92891239289122 |   68.4666917 |  264.83602008360039
   65 |     0 |         0.0000 |  14001 |  0.011547573 |    0.0503071805030717 |  3.661455369661455522 |  0.969207740969207972 |   86.5982825 |   14.9656548 |  209.78593957859483
   66 |     0 |         0.0000 |  14001 |  0.052667555 |    0.04771644 |  4.565272390565272418 |  0.975236135975236327 |   18.9870216 |   68.2571512 |  261.57084035708419
   67 |     0 |         0.0000 |  14001 |  0.008514638008514639 |    0.0480406404803989 |  4.938804767938763955 |  0.978348984978348825 |  117.44480714447953 |   11.03497070349718 |  282.97266909703306
   68 |     0 |         0.0000 |  14001 |  0.017723966 |    0.04660213 |  1.785804269785804534 |  0.976900743976900923 |   56.4207807 |   22.9702600 |  102.31904773190628
   69 |     0 |         0.0000 |  14001 |  0.013408861 |    0.04526629 | -0.218064193218064190 |  0.976731995976732181 |   74.5775492 |   17.3778840 |  -12.49415794941577
   70 |     0 |         0.0000 |  14001 |  0.004944881 |    0.04401069 |  3.792380701792380744 |  0.977679719977679901 |  202.2293298 |    6.4085660 |  217.28740842874110
   71 |     0 |         0.0000 |  14001 |  0.024477668 |    0.0422197304221972 |  2.795576240795577278 |  0.982047887982048043 |   40.8535657 |   31.72305727230571 |  160.17471981747793
   72 |     0 |         0.0000 |  14001 |  0.025733760 |    0.0458498304584982 |  3.159867016159868064 |  0.992264397992264469 |   38.8594588 |   33.3509534 |  181.04704380471039
   73 |     0 |         0.0000 |  14001 |  0.044937430 |    0.04272239 |  0.214967037214967211 |  0.979100869979101049 |   22.2531639 |   58.2389096 |   12.31670403167139
   74 |     0 |         0.0000 |  14001 |  0.018373301 |    0.04170326 |  4.267372615267372691 |  0.976418419976418626 |   54.4268023 |   23.8117976 |  244.50244055024448
   75 |     0 |         0.0000 |  14001 |  0.016041231 |    0.04508949 |  2.028721000028720999 |  0.980103194980103372 |   62.3393556 |   20.7894353 |  116.23715112371510



"Evolutive" outputs can be obtained with the -s option, e.g. -s 1000 computes an analysis for every 1000 points.

...